Package: gwaRs 0.3.0
gwaRs: Manhattan, Q-Q, and PCA Plots using 'ggplot2'
Generate Manhattan, Q-Q, and PCA plots from GWAS and PCA results using 'ggplot2'.
Authors:
gwaRs_0.3.0.tar.gz
gwaRs_0.3.0.zip(r-4.7)gwaRs_0.3.0.zip(r-4.6)gwaRs_0.3.0.zip(r-4.5)
gwaRs_0.3.0.tgz(r-4.6-any)gwaRs_0.3.0.tgz(r-4.5-any)
gwaRs_0.3.0.tar.gz(r-4.7-any)gwaRs_0.3.0.tar.gz(r-4.6-any)
gwaRs_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gwaRs/json (API)
NEWS
| # Install 'gwaRs' in R: |
| install.packages('gwaRs', repos = c('https://lindonkambule.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lindonkambule/gwars/issues
- gwasData - GWAS results
- highlightSNPS - Highlight SNPs
- pcaData - PCA results
Last updated from:58f56c7115. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 154 | ||
| source / vignettes | OK | 211 | ||
| linux-release-x86_64 | WARNING | 151 | ||
| macos-release-arm64 | WARNING | 167 | ||
| macos-oldrel-arm64 | WARNING | 192 | ||
| windows-devel | WARNING | 136 | ||
| windows-release | WARNING | 132 | ||
| windows-oldrel | WARNING | 108 | ||
| wasm-release | OK | 115 |
Exports:karyotype_plotman_plotmirrored_man_plotpca_plotqq_plot
Dependencies:clicpp11data.tabledplyrfarvergenericsggplot2ggrepelgluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigpurrrR6RColorBrewerRcpprlangS7scalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create Manhattan, Q-Q, and PCA plots for GWAS data. | gwaRs-package gwaRs |
| GWAS results | gwasData |
| Highlight SNPs | highlightSNPS |
| Karyotype Plot | karyotype_plot |
| Manhattan Plot | man_plot |
| Mirrored Manhattan Plot | mirrored_man_plot |
| PCA Plot | pca_plot |
| PCA results | pcaData |
| QQ Plot | qq_plot |
