{
  "_id": "6a1edb44b401979e7340f7da",
  "Type": "Package",
  "Package": "gwaRs",
  "Title": "Manhattan, Q-Q, and PCA Plots using 'ggplot2'",
  "Version": "0.3.0",
  "Authors@R": "person(given = \"Lindokuhle\",\nfamily = \"Nkambule\",\nrole = c(\"aut\", \"cre\"),\nemail = \"lindonkambule116@gmail.com\",\ncomment = c(ORCID = \"0000-0002-5682-2834\"))",
  "Description": "Generate Manhattan, Q-Q, and PCA plots from GWAS and PCA\nresults using 'ggplot2'.",
  "License": "MIT + file LICENCE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.1.1",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/LindoNkambule/gwaRs",
  "BugReports": "https://github.com/LindoNkambule/gwaRs/issues",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://lindonkambule.r-universe.dev",
  "Date/Publication": "2021-04-25 17:49:49 UTC",
  "RemoteUrl": "https://github.com/lindonkambule/gwars",
  "RemoteRef": "HEAD",
  "RemoteSha": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-20 08:56:34 UTC",
    "User": "root"
  },
  "Author": "Lindokuhle Nkambule [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5682-2834>)",
  "Maintainer": "Lindokuhle Nkambule <lindonkambule116@gmail.com>",
  "MD5sum": "737fb0f7d1141115ae00ae8f4e49da8a",
  "_user": "lindonkambule",
  "_type": "src",
  "_file": "gwaRs_0.3.0.tar.gz",
  "_fileid": "578c17856af4bffa2a701462ce47682d1e7e6280f453fecda294b6e5497346d6",
  "_filesize": 4863274,
  "_sha256": "578c17856af4bffa2a701462ce47682d1e7e6280f453fecda294b6e5497346d6",
  "_created": "2026-05-20T08:56:34.000Z",
  "_published": "2026-06-02T13:31:48.513Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79082146017,
      "time": 154,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7105618910"
    },
    {
      "job": 79082146151,
      "time": 151,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105617516"
    },
    {
      "job": 79082146223,
      "time": 192,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7105620121"
    },
    {
      "job": 79082145811,
      "time": 167,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105615699"
    },
    {
      "job": 79082144911,
      "time": 211,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7105563593"
    },
    {
      "job": 79082144729,
      "time": 115,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7359076660"
    },
    {
      "job": 79082145737,
      "time": 136,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7105611678"
    },
    {
      "job": 79082146047,
      "time": 108,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7105602331"
    },
    {
      "job": 79082146046,
      "time": 132,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7105610236"
    }
  ],
  "_buildurl": "https://github.com/r-universe/lindonkambule/actions/runs/26152044872",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/lindonkambule/gwars",
  "_commit": {
    "id": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
    "author": "LindoNkambule <lindonkambule116@gmail.com>",
    "committer": "LindoNkambule <lindonkambule116@gmail.com>",
    "message": "added total number of downloads badge\n",
    "time": 1619372989
  },
  "_maintainer": {
    "name": "Lindokuhle Nkambule",
    "email": "lindonkambule116@gmail.com",
    "login": "lindonkambule",
    "description": "",
    "uuid": 42571874,
    "orcid": "0000-0002-5682-2834"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "RColorBrewer",
      "version": ">= 1.1.2",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    }
  ],
  "_owner": "lindonkambule",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "lindonkambule",
      "count": 55,
      "uuid": 42571874
    }
  ],
  "_userbio": {
    "uuid": 42571874,
    "type": "user",
    "name": "LindoNkambule"
  },
  "_downloads": {
    "count": 206,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gwaRs"
  },
  "_devurl": "https://github.com/lindonkambule/gwars",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/gwaRs.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/lindonkambule/gwars",
  "_realowner": "lindonkambule",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-01-21"
    },
    {
      "version": "0.2.0",
      "date": "2021-01-25"
    },
    {
      "version": "0.3.0",
      "date": "2021-04-19"
    }
  ],
  "_exports": [
    "karyotype_plot",
    "man_plot",
    "mirrored_man_plot",
    "pca_plot",
    "qq_plot"
  ],
  "_datasets": [
    {
      "name": "gwasData",
      "title": "GWAS results",
      "object": "gwasData",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "CHR",
        "SNP",
        "BP",
        "A1",
        "F_A",
        "F_U",
        "A2",
        "CHISQ",
        "P",
        "OR"
      ],
      "rows": 179493,
      "table": true,
      "tojson": true
    },
    {
      "name": "highlightSNPS",
      "title": "Highlight SNPs",
      "object": "highlightSNPS",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "pcaData",
      "title": "PCA results",
      "object": "pcaData",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13",
        "V14",
        "V15",
        "V16",
        "V17",
        "V18",
        "V19",
        "V20",
        "V21",
        "V22"
      ],
      "rows": 89,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "gwaRs",
      "title": "Create Manhattan, Q-Q, and PCA plots for GWAS data.",
      "topics": [
        "gwaRs-package",
        "gwaRs"
      ]
    },
    {
      "page": "gwasData",
      "title": "GWAS results",
      "topics": [
        "gwasData"
      ]
    },
    {
      "page": "highlightSNPS",
      "title": "Highlight SNPs",
      "topics": [
        "highlightSNPS"
      ]
    },
    {
      "page": "karyotype_plot",
      "title": "Karyotype Plot",
      "topics": [
        "karyotype_plot"
      ]
    },
    {
      "page": "man_plot",
      "title": "Manhattan Plot",
      "topics": [
        "man_plot"
      ]
    },
    {
      "page": "mirrored_man_plot",
      "title": "Mirrored Manhattan Plot",
      "topics": [
        "mirrored_man_plot"
      ]
    },
    {
      "page": "pca_plot",
      "title": "PCA Plot",
      "topics": [
        "pca_plot"
      ]
    },
    {
      "page": "pcaData",
      "title": "PCA results",
      "topics": [
        "pcaData"
      ]
    },
    {
      "page": "qq_plot",
      "title": "QQ Plot",
      "topics": [
        "qq_plot"
      ]
    }
  ],
  "_readme": "https://github.com/lindonkambule/gwars/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "data.table",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "ggrepel",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "gwaRs.Rmd",
      "filename": "gwaRs.html",
      "title": "gwaRs",
      "author": "Lindokuhle Nkambule",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction to the gwaRs package",
        "1. Example data",
        "1.A gwasData",
        "1.B pcaData",
        "2. Manhattan plots",
        "2A. Basic Manhattan plot",
        "2B. Change graphical parameters",
        "2C. Annotate SNPs by p-value",
        "2D. Annotate SNPs by rsids",
        "2E. Highlight SNPs by rsid",
        "2F. Looking at a single chromosome",
        "3. Mirrored Manhattan Plots",
        "4. Q-Q plots",
        "5. PCA plots",
        "6. Karyotype plots"
      ],
      "created": "2021-01-17 00:48:45",
      "modified": "2021-04-19 16:51:11",
      "commits": 3
    }
  ],
  "_score": 4.176091259055681,
  "_indexed": true,
  "_nocasepkg": "gwars",
  "_universes": [
    "lindonkambule"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.0",
      "date": "2026-05-20T08:58:50.000Z",
      "distro": "noble",
      "commit": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
      "fileid": "0a0c0717a1b4afab45da5c6f49c0eb4dba8e7b8dc5dd265b08719ec253f274d7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/lindonkambule/actions/runs/26152044872"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3.0",
      "date": "2026-05-20T08:58:48.000Z",
      "distro": "noble",
      "commit": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
      "fileid": "2bf58a4271de62cae8b3c779ddb55593c42c0e3492e0ea3f164e6235f9a45966",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/lindonkambule/actions/runs/26152044872"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.0",
      "date": "2026-05-20T08:59:04.000Z",
      "commit": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
      "fileid": "d9e028cd254b22b0f012882fca1207d36fd527844b777f17ecc90a8036794009",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/lindonkambule/actions/runs/26152044872"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.3.0",
      "date": "2026-05-20T08:58:48.000Z",
      "commit": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
      "fileid": "fc3b6a4eb8b472cfdd1bc09be4239ae5b3137b0cd062c82b6dbfa664677edb8b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/lindonkambule/actions/runs/26152044872"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.0",
      "date": "2026-05-20T08:58:23.000Z",
      "commit": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
      "fileid": "e37f23132380a9734c1efbbc2aed58f14c8be4578ba5e47219d12023c8e68c69",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/lindonkambule/actions/runs/26152044872"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.0",
      "date": "2026-05-20T08:57:56.000Z",
      "commit": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
      "fileid": "1345a0e69cc41377e2586a02ca082771cd961700b2e9d7fe615180b5ae238aae",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/lindonkambule/actions/runs/26152044872"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.3.0",
      "date": "2026-05-20T08:58:16.000Z",
      "commit": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
      "fileid": "8344081587fa661ffeb86b1a78fb118559e2518495734f6c3b63b15544598627",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/lindonkambule/actions/runs/26152044872"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.0",
      "date": "2026-06-02T13:30:02.000Z",
      "commit": "58f56c7115c33257ab83e4d59f7f5bf7faf3c826",
      "fileid": "a2af7de981f92646875654166083f1d501304791047de1718eb416753a86e181",
      "status": "success",
      "buildurl": "https://github.com/r-universe/lindonkambule/actions/runs/26152044872"
    }
  ]
}